연구프로젝트

미생물 유전체 다양성 파악을 위한 DNA microarray 기법과 비모수 통계분석을 이용한 토양 미생물의 전지구적 진화/분포 양상 연구. 2006. 03. 01 ~ 2009. 02. 28. 한국과학재단 특정연구지원사업

바이오 안전소재개발 2006. 08. 01 ~ 2011. 07. 31. 서울시 산학연 협력사업 (바이오 소재 산업화 혁신 클러스터)

메타게노믹스를 이용한 리파제 생산균주의 탐색 2007. 07. 01 ~ 2009. 06. 30. 경기도 GRRC센터.

토양에 서식하는 중온성 Archaea(phylum Thaumarchaeota)의 분자계통학적 다양성 및 생태학적 지위를 조형하는 환경 요인의 규명 2012. 05. 01 ~ 2015. 04. 30. 한국연구재단.

수상 및 연구업적

I. 국제학술지

Kim, H. -J., H. -J. Lee, K. -H. Lee, and J. -C. Cho. 2012. Simultaneous detection of pathogenic Vibrio species using multiplex real-time PCR. Food. Control. 491-498.

Kim, H.-J., and J. C. Cho. 2010. Simple and rapid detection of Listeria monocytogenes in fruit juice by real-time PCR without enrichment culture. Food. Control. 21:1419-1423

Lee, S. -H., J. -O. Ka, J. -C. Cho. 2008. Members of the phylum Acidobacteria are dominant and metabolially active in rhizosphrtr soil. FEMS Microbiology Letters. 285: 263-269.

Ju, D. -H., M. -K. Choi, J. -H. Ahn, M. -H. Kim, J. -C. Cho, T. Kim, T. Kim, C. N. Seong, and J. -O. Ka. 2007. Molecular and ecological analyses of microbial community structures in biofil ms of a full-scale aerated up-flow biobead process. Journal of Microbiology and Biotechnolo gy. 17:253-261.

Hwang, K. -O. and J. -C. Cho. 2006. Evaluation of DNA microarray approach for identifying strain-specific genes. Journal of Microbiology and Biotechnology.16:1773-1777.

Nam,I.-Y.,J.-C. Cho, H.Myung, and K.Joh. 2006.Stimulation of platelet-activating factor(PAF) synthesis in human intestinal epithelial cellline by aerolysin from Aeromonas encheleia. 2006. Journal of Microbiology and Biotechnology.16:1292-1300.

Hwang, K. -O., H. -M. Jang, and J. -C. Cho. 2005. Diversity and genotypic structure of ECO R collection determined by repetitive extragenic palindromic PCR genomic fingerprinting. Jour nal of Microbiology and Biotechnology.15:672-677.

Lee, S. -H., H. -R. Oh, J. -H, Lee, S. -J. Kim, and J. -C. Cho. 2004. Cold-seep sediment harb ors phylogenetically diverse uncultured bacteria. Journal of Microbiology and Biotechnology .14:906-913.

Cho, J. -C. and J. M. Tiedje. 2002. Quantitative detection of microbial genes using DNA microarray. Applied and Environmental Microbiology. 68:1425-1430.

Cho, J. -C. and J. M. Tiedje. 2001. Bacterial species determination from DNA-DNA hybridiza tion using genome fragments and DNA microarray. Applied and Environmental Microbiology .67:3677-3682.

Cho, J. -C. and S. -J. Kim. 2001. Detection of mega plasmid from polycyclic aromatic hydrocarbon-degrading Sphingomonas sp. strainKS14 . Journal of Molecular Microbiology and Biotechnology.3:503-506.

Cho, J. -C. and J. M. Tiedje. 2000. Biogeography and degree of endemicity of fluorescent Pseudomonasinsoil.Applied and Environmental Microbiology66:5448~5456.

Cho, J. -C. and S. -J. Kim. 2000. Computer-assisted single-strand-conformation-poly morphism analysis for assessing shift in soil bacterial community structure during bioremediational treatments. World Journal of Microbiology and Biotechnology 16:231-235.

II. 국내학술지

K. Hong and J. C. Cho, 2012, High Level of Bacterial Diversity and Novel Taxa in Continental Shelf Sediment, J. Microbiol. Biotechnol. 22:771-779

J. K. Hong and J. C. Cho, 2011, The Phylogenetic Affiliation of an Uncultured Population of Ammonia-Oxidizing Bacteria Harboring Environmental Sequences of amoA Cluster-3, J. Microbiol. Biotechnol. 21:567-573

Kim, H.-J., and J. C. Cho. 2008. Rapid and sensitive detection of ListeriamonocytogenesusingaPCR-enzyme-linked immunosorbentassay.J.Microbiol.Biotechnol.18:1858-1861

Cho, J.-C. 2004. DNA microarrays for comparative genomics: identifying conserved and variable sequences in prokaryotic genomes. Genomics and Informatics. 2:53-56

Cho, J. -C. 2003. DNA chip for monitoring ecosystem. Microbes and Industry.29:15-19.

Cho, J. -C. and K. -H. Lee. 2002. Microbial diversity and resources. Bioindustry. 15:32-36.

Cho, J. -C. 2001. Environmental genomics: application of DNA microarray technology to environmental microbiology. Bioindustry. 14:24-30.

Cho, J. -C., D. -H. Lee, Y. -C. Cho, J. -C. Cho, and S. -J. Kim. 1996. Direct extraction of DNA from soil for amplification of 16S rRNA gene sequences by polymerase chain reaction. Journal of Microbiology.34:229-235.

III. 교내학술지

Kim, H. -J. and J. -C. Cho. 2012. 비브리오의 유전형 분석. Journal of Environmental Science and Engineering. 15:47-53.

J. K. Hong and J. C. Cho, 2010, 난배양성 Archaea의 계통학적 다양성,?J. Environ. Sci. Eng., 13:29-36

Kim, D.-H. and J.-C. Cho. 2009. 난배양성 세균 배양법 개발의 주요 고려인자. Journal of Environmental Science and Engineering. 12:66-72.

Hong, J.-K. and J.-C. Cho. 2009. Planctomycetes 미생물생태학 연구에서 미생물 배양의 필요성. Journal of Environmental Science and Engineering. 12:22-26.

Hong, J.-K. and J.-C. Cho. 2008. Planctomycetes 문 (phylum)의 계통학적 위치와 생태학적 연구 가치. Journal of Environmental Science and Engineering. 10:53-60.

Hong, J.-K. and J.-C. Cho. 2007. 리파아제의 특성과 응용. Journal of Environmental Science and Engineering. 9:26-36.

Kim, H.-J. and J.-C. Cho. 2007. 중합효소연쇄반응 (polymerase chain reaction)과 효소결합면역반응 (enzyme-linked immunosorbent assay)을 이용한 식중독 세균 Listeria monocytogenes의 검출. Journal of Environmental Science and Engineering. 9:58-61.

Lee, S. -H. and J. -C. Cho. 2006. Diversity of Acidobacteria. Journal of Environmental Science and Engineering. 8:21-27.

Yu, C. and J.-C. Cho. 2006. Fluorescently labeled terminal-restriction fragment length polymorphism analysis for monitoring microbial community structure. JournalofEnvironmentalScienceandEngineering.8:42-47.

Song, J. -H., S. -H. Lee, and J. -C. Cho. 2005. Effect of PCR bias on the template-to-product ratio of 16S rRNA genes amplified from environmental DNA. JournalofEnvironmentalScienceandEngineering.7:69-76.

Lee, S. -H. and J. -C. Cho. 2004. Construction of metagenome library using polymerase chain reaction. Journal of Environmental Science and Engineering. 6:74-76.

Im. M. -R., C. Yu, and J. -C. Cho. 2003. Extraction of community DNA from environmental samples. Journal of Environmental Science and Engineering. 5:17-19.

Hwang, K. -O, M. -R. Im, C. Yu, J. -C. Cho. 2003. Diversity and evolution of denitrifying bacteria. Journal of Environmental Science and Engineering. 5:7-16.

Song, J. -H, H. -R. Oh, K. -H. Lee, J. -C. Cho. 2002. DNA microarray technology in environmental sciences. Journal of Environmental Science and Engineering. 4:14-26.

Jun, Y. -H, K. -J. Park, K. -C. Nam, S. -M. Kim, J. -C. Cho, and K. -H. Lee. 2002. Genetic variations in prokaryote and sepecies concept. Journal of Environmental Science and Engineering.4:1-13.

IV. 국제 학술대회 발표

Lee, S. -H. and J. -C. Cho. 2007. Global distribution patterns and phylogenetic diversity of phylum Acidobacteria. Abstracts of the 107th General Meeting of the American Society for Microbiology. p431. AmericanSocietyforMicrobiology.

Cho, J. -C. and J. M. Tiedje. 2007. Genomic heterogeneity and geographic structure in endemic genotypes of fluorescent Pseudomonas.Abstracts of the 107th General Meeting of the American Society for Microbiology. p459. AmericanSocietyforMicrobiology.

Lee, S. -H. and J. -C. Cho. 2007. Global distribution patterns and phylogenetic diversity of phylum Acidobacteria. Abstracts of the 107th General Meeting of the American Society for Microbiology. p431. AmericanSocietyforMicrobiology.

Hwnag, K. -O. and J. -C. Cho. 2005. Genomic diversity of ECOR strains determined by DNA microarrays. Abstracts of the 105th General Meeting of the American Society for Microbiology. P556. AmericanSocietyforMicrobiology.

Lee, S. -H. and J. -C. Cho. 2005. Phylogenetic diversity of rhizosphere soil determined by reverse transcription-PCR. Abstracts of the 105th General Meeting of the American Society for Microbiology. p417. AmericanSocietyforMicrobiology.

Song, J. -H., C. Yu, S. -H. Lee, K. -O. Hwang, and J. -C. Cho. 2005. Evaluation of PCR-amplification bias in T-RFLP analysis. Abstracts of the 105th General Meeting of the American Society for Microbiology. p402. AmericanSocietyforMicrobiology.

Cho, J. -C.and J. M. Tiedje. 2001. Identification of bacteria using DNA microarray. Abstracts of the 9th International Symposiumon MicrobialEcology.International Society for Microbial Ecology.

Cho, J. -C. and J. M. Tiedje. 2001. Detection of environmental genes using DNA microarray. Abstracts of the 101th General Meeting of the American Society for Microbiology. AmericanSocietyforMicrobiology.

Cho, J. -C. and J. M. Tiedje. 2000. DNA relatedness of world-wide collection of fluorescent Pseudomonasgenotypes. Abstract of the 100th General Meeting of the American Society for Microbiology. American Society for Microbiology.

V. 특허/프로그램/등록

알에이피디법을 이용한 바이러스의 동정방법 2011년출원

Pseudomonas fluorescence strain HUFS-629 producing Lipase. 2010년 출원.

Acinetobacter HUFS-007 producing Lipase. 2009년 출원.

과일 주스의 식중독 세균을 검출하기 위한 방법. 2008년 출원.

항체면역결합반응을 이용한 Listeria monocytogenes의 검출법. 2007년 출원.

Electronic Measurement of DNA Hybridization. 2002 US Patent (Pending)

Bacterial Species Determinations from DNA-DNA hybridization Using Genome fragments and DNA Microarrays. 2002 US Patent (Pending)

다핵방향족탄화수소를 분해하는 Arthrobacter oxydans JS-15. 2000년